OpenMx trunk

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Updated: 3 days 15 hours ago

Row weights, version 2 git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3481 df83fd30-4cca-...

Fri, 05/30/2014 - 20:58
In openmx/openmx.git:master Row weights, version 2 git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3481 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

Minor optimization git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3480 df83fd30-4cca-4c36...

Fri, 05/30/2014 - 20:58
In openmx/openmx.git:master Minor optimization git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3480 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

Remove deadcode git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3479 df83fd30-4cca-4c36-ab...

Fri, 05/30/2014 - 20:58
In openmx/openmx.git:master Remove deadcode git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3479 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

If an MxMatrix is constant, avoid copy git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@347...

Fri, 05/30/2014 - 20:58
In openmx/openmx.git:master If an MxMatrix is constant, avoid copy git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3478 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

Roxygen should use the same REXEC as found in the Makefile git-svn-id: http://openmx.psyc.virgin...

Fri, 05/30/2014 - 20:58
In openmx/openmx.git:master Roxygen should use the same REXEC as found in the Makefile git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3477 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

Updates to DESCRIPTION file: make date current, add myself and Mahsa to authors list. git-svn-id...

Tue, 05/20/2014 - 10:37
In openmx/openmx.git:master Updates to DESCRIPTION file: make date current, add myself and Mahsa to authors list. git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3474 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

Fix for R 3.1 Apparently, R no longer copies everything it sends through .Call. This is good bec...

Fri, 05/16/2014 - 23:44
In openmx/openmx.git:master Fix for R 3.1 Apparently, R no longer copies everything it sends through .Call. This is good because it means there is a potential performance improvement. However, OpenMx was never tested in this situation. An easy fix is to unconditionally copy MxMatrix@values when we import the data from R without worrying about whether the matrix is constant or not. git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3473 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

Add packageStartupMessage if compiled without OpenMP git-svn-id: http://openmx.psyc.virginia.edu...

Fri, 05/16/2014 - 23:17
In openmx/openmx.git:master Add packageStartupMessage if compiled without OpenMP git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3472 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

Remove unused return value git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3471 df83fd30-4...

Fri, 05/16/2014 - 23:17
In openmx/openmx.git:master Remove unused return value git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3471 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

Remove unicode blob from doc git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3470 df83fd30...

Fri, 05/16/2014 - 09:57
In openmx/openmx.git:master Remove unicode blob from doc git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3470 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

Restore behavior of creating tarballs in build/ subdir git-svn-id: http://openmx.psyc.virginia.e...

Fri, 05/16/2014 - 09:02
In openmx/openmx.git:master Restore behavior of creating tarballs in build/ subdir git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3469 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

Remove extra copy of # of evaluations Date: Fri, 16 May 2014 09:22:12 +0000 From: "Brick, Timoth...

Fri, 05/16/2014 - 09:02
In openmx/openmx.git:master Remove extra copy of # of evaluations Date: Fri, 16 May 2014 09:22:12 +0000 From: "Brick, Timothy" <brick@mpib-berlin.mpg.de> I'm looking back at the logs, and I'm not sure exactly why that was. The thing that springs to mind was that the second value was originally a placeholder intended to eventually keep a separate number for row-wise computations. There was a reason somebody wanted a report of row-wise computations, but I think we found an alternative or realized we weren't that interested in it as a benchmark, so the idea got shelved. I can't think of any other reason this would have been done, and I imagine it's no longer important to keep. git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3468 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

changes to doc files git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3467 df83fd30-4cca-4c...

Fri, 05/16/2014 - 08:21
In openmx/openmx.git:master changes to doc files git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3467 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

changes to doc files git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3466 df83fd30-4cca-4c...

Fri, 05/16/2014 - 08:21
In openmx/openmx.git:master changes to doc files git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3466 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

changes to doc files git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3465 df83fd30-4cca-4c...

Fri, 05/16/2014 - 08:21
In openmx/openmx.git:master changes to doc files git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3465 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

changes to doc files git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3464 df83fd30-4cca-4c...

Fri, 05/16/2014 - 08:20
In openmx/openmx.git:master changes to doc files git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3464 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

Fix algebra dependency tracking I'm not sure how to write a test case, but here is the code that...

Fri, 05/16/2014 - 08:02
In openmx/openmx.git:master Fix algebra dependency tracking I'm not sure how to write a test case, but here is the code that was not working. mxAlgebra(t(F%*%(solve(bigI - A))%*%t(M)),name = "expMean"), There were free parameters in the M matrix. Apparently, t(M) was compiled into an algebra with populateLocations. Since the beginning of history, we always assumed that anything with a populate location was not an algebra. I'm not sure when this assumption changed. git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3463 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

Name anonymous algebras to aid debugging git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3...

Fri, 05/16/2014 - 08:02
In openmx/openmx.git:master Name anonymous algebras to aid debugging git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3462 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

numThreads is always 1 without openmp git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3461...

Fri, 05/16/2014 - 08:02
In openmx/openmx.git:master numThreads is always 1 without openmp git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3461 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

Note location of a promising non-linear optimizer project git-svn-id: http://openmx.psyc.virgini...

Fri, 05/16/2014 - 08:01
In openmx/openmx.git:master Note location of a promising non-linear optimizer project git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3460 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1