Commit messages

September 15, 2014

jpritikin committed r3813 in OpenMx at 11:42:
(Re?)enable parallel processing for confidence intervals
in /trunk/src: ComputeGD.cpp (modified, previous: r3796)

September 13, 2014

jpritikin committed r3812 in OpenMx at 13:50:
Grab Eigen from RcppEigen
in /trunk:
  • DESCRIPTION.in (modified, previous: r3788)
  • src/Eigen/Array (deleted: r3140)
  • src/Eigen/CMakeLists.txt (deleted: r3140)
  • src/Eigen/Cholesky (deleted: r3140)
  • src/Eigen/CholmodSupport (deleted: r3140)
  • src/Eigen/Core (deleted: r3140)
  • src/Eigen/Dense (deleted: r3140)
  • src/Eigen/Eigen (deleted: r3140)
  • src/Eigen/Eigenvalues (deleted: r3140)
  • src/Eigen/Geometry (deleted: r3140)
  • src/Eigen/Householder (deleted: r3140)
  • src/Eigen/IterativeLinearSolvers (deleted: r3140)
  • src/Eigen/Jacobi (deleted: r3140)
  • src/Eigen/LU (deleted: r3140)
  • src/Eigen/LeastSquares (deleted: r3140)
  • src/Eigen/MetisSupport (deleted: r3140)
  • src/Eigen/OrderingMethods (deleted: r3140)
  • src/Eigen/PaStiXSupport (deleted: r3140)
  • src/Eigen/PardisoSupport (deleted: r3140)
  • src/Eigen/QR (deleted: r3140)
  • src/Eigen/QtAlignedMalloc (deleted: r3140)
  • src/Eigen/SPQRSupport (deleted: r3140)
  • src/Eigen/SVD (deleted: r3140)
  • src/Eigen/Sparse (deleted: r3140)
  • src/Eigen/SparseCholesky (deleted: r3140)
  • src/Eigen/SparseCore (deleted: r3140)
  • src/Eigen/SparseLU (deleted: r3140)
  • src/Eigen/SparseQR (deleted: r3140)
  • src/Eigen/StdDeque (deleted: r3140)
  • src/Eigen/StdList (deleted: r3140)
  • src/Eigen/StdVector (deleted: r3140)
  • src/Eigen/SuperLUSupport (deleted: r3140)
  • src/Eigen/UmfPackSupport (deleted: r3140)
  • src/Eigen/src/CMakeLists.txt (deleted: r3140)
  • src/Eigen/src/Cholesky/CMakeLists.txt (deleted: r3140)
  • src/Eigen/src/Cholesky/LDLT.h (deleted: r3140)
  • src/Eigen/src/Cholesky/LLT.h (deleted: r3140)
  • src/Eigen/src/Cholesky/LLT_MKL.h (deleted: r3140)
  • src/Eigen/src/CholmodSupport/CMakeLists.txt (deleted: r3140)
  • src/Eigen/src/CholmodSupport/CholmodSupport.h (deleted: r3140)
  • src/Eigen/src/Core/Array.h (deleted: r3140)
  • src/Eigen/src/Core/ArrayBase.h (deleted: r3140)
  • src/Eigen/src/Core/ArrayWrapper.h (deleted: r3140)
  • src/Eigen/src/Core/Assign.h (deleted: r3140)
  • src/Eigen/src/Core/Assign_MKL.h (deleted: r3140)
  • src/Eigen/src/Core/BandMatrix.h (deleted: r3140)
  • src/Eigen/src/Core/Block.h (deleted: r3140)
  • src/Eigen/src/Core/BooleanRedux.h (deleted: r3140)
  • src/Eigen/src/Core/CMakeLists.txt (deleted: r3140)
  • src/Eigen/src/Core/CommaInitializer.h (deleted: r3140)
  • src/Eigen/src/Core/CoreIterators.h (deleted: r3140)
  • src/Eigen/src/Core/CwiseBinaryOp.h (deleted: r3140)
  • src/Eigen/src/Core/CwiseNullaryOp.h (deleted: r3140)
  • src/Eigen/src/Core/CwiseUnaryOp.h (deleted: r3140)
  • src/Eigen/src/Core/CwiseUnaryView.h (deleted: r3140)
  • src/Eigen/src/Core/DenseBase.h (deleted: r3140)
  • src/Eigen/src/Core/DenseCoeffsBase.h (deleted: r3140)
  • src/Eigen/src/Core/DenseStorage.h (deleted: r3140)
  • src/Eigen/src/Core/Diagonal.h (deleted: r3140)
  • src/Eigen/src/Core/DiagonalMatrix.h (deleted: r3140)
  • src/Eigen/src/Core/DiagonalProduct.h (deleted: r3140)
  • src/Eigen/src/Core/Dot.h (deleted: r3140)
  • src/Eigen/src/Core/EigenBase.h (deleted: r3140)
  • src/Eigen/src/Core/Flagged.h (deleted: r3140)
  • src/Eigen/src/Core/ForceAlignedAccess.h (deleted: r3140)
  • src/Eigen/src/Core/Functors.h (deleted: r3140)
  • src/Eigen/src/Core/Fuzzy.h (deleted: r3140)
  • src/Eigen/src/Core/GeneralProduct.h (deleted: r3140)
  • src/Eigen/src/Core/GenericPacketMath.h (deleted: r3140)
  • src/Eigen/src/Core/GlobalFunctions.h (deleted: r3140)
  • src/Eigen/src/Core/IO.h (deleted: r3140)
  • src/Eigen/src/Core/Map.h (deleted: r3140)
  • src/Eigen/src/Core/MapBase.h (deleted: r3140)
  • src/Eigen/src/Core/MathFunctions.h (deleted: r3140)
  • src/Eigen/src/Core/Matrix.h (deleted: r3140)
  • src/Eigen/src/Core/MatrixBase.h (deleted: r3140)
  • src/Eigen/src/Core/NestByValue.h (deleted: r3140)
  • src/Eigen/src/Core/NoAlias.h (deleted: r3140)
  • src/Eigen/src/Core/NumTraits.h (deleted: r3140)
  • src/Eigen/src/Core/PermutationMatrix.h (deleted: r3140)
  • src/Eigen/src/Core/PlainObjectBase.h (deleted: r3140)
  • src/Eigen/src/Core/ProductBase.h (deleted: r3140)
  • src/Eigen/src/Core/Random.h (deleted: r3140)
  • src/Eigen/src/Core/Redux.h (deleted: r3140)
  • src/Eigen/src/Core/Ref.h (deleted: r3140)
  • src/Eigen/src/Core/Replicate.h (deleted: r3140)
  • src/Eigen/src/Core/ReturnByValue.h (deleted: r3140)
  • src/Eigen/src/Core/Reverse.h (deleted: r3140)
  • src/Eigen/src/Core/Select.h (deleted: r3140)
  • src/Eigen/src/Core/SelfAdjointView.h (deleted: r3140)
  • src/Eigen/src/Core/SelfCwiseBinaryOp.h (deleted: r3140)
  • src/Eigen/src/Core/SolveTriangular.h (deleted: r3140)
  • src/Eigen/src/Core/StableNorm.h (deleted: r3140)
  • src/Eigen/src/Core/Stride.h (deleted: r3140)
  • src/Eigen/src/Core/Swap.h (deleted: r3140)
  • src/Eigen/src/Core/Transpose.h (deleted: r3140)
  • src/Eigen/src/Core/Transpositions.h (deleted: r3140)
  • src/Eigen/src/Core/TriangularMatrix.h (deleted: r3140)
  • src/Eigen/src/Core/VectorBlock.h (deleted: r3140)
  • src/Eigen/src/Core/VectorwiseOp.h (deleted: r3140)
  • src/Eigen/src/Core/Visitor.h (deleted: r3140)
  • src/Eigen/src/Core/arch/AltiVec/CMakeLists.txt (deleted: r3140)
  • src/Eigen/src/Core/arch/AltiVec/Complex.h (deleted: r3140)
  • src/Eigen/src/Core/arch/AltiVec/PacketMath.h (deleted: r3140)
  • src/Eigen/src/Core/arch/CMakeLists.txt (deleted: r3140)
  • src/Eigen/src/Core/arch/Default/CMakeLists.txt (deleted: r3140)
  • src/Eigen/src/Core/arch/Default/Settings.h (deleted: r3140)
  • src/Eigen/src/Core/arch/NEON/CMakeLists.txt (deleted: r3140)
  • src/Eigen/src/Core/arch/NEON/Complex.h (deleted: r3140)
  • src/Eigen/src/Core/arch/NEON/PacketMath.h (deleted: r3140)
  • src/Eigen/src/Core/arch/SSE/CMakeLists.txt (deleted: r3140)
  • src/Eigen/src/Core/arch/SSE/Complex.h (deleted: r3140)
  • src/Eigen/src/Core/arch/SSE/MathFunctions.h (deleted: r3140)
  • src/Eigen/src/Core/arch/SSE/PacketMath.h (deleted: r3140)
  • src/Eigen/src/Core/products/CMakeLists.txt (deleted: r3140)
  • src/Eigen/src/Core/products/CoeffBasedProduct.h (deleted: r3140)
  • src/Eigen/src/Core/products/GeneralBlockPanelKernel.h (deleted: r3140)
  • src/Eigen/src/Core/products/GeneralMatrixMatrix.h (deleted: r3140)
  • src/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h (deleted: r3140)
  • src/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_MKL.h (deleted: r3140)
  • src/Eigen/src/Core/products/GeneralMatrixMatrix_MKL.h (deleted: r3140)
  • src/Eigen/src/Core/products/GeneralMatrixVector.h (deleted: r3140)
  • src/Eigen/src/Core/products/GeneralMatrixVector_MKL.h (deleted: r3140)
  • src/Eigen/src/Core/products/Parallelizer.h (deleted: r3140)
  • src/Eigen/src/Core/products/SelfadjointMatrixMatrix.h (deleted: r3140)
  • src/Eigen/src/Core/products/SelfadjointMatrixMatrix_MKL.h (deleted: r3140)
  • src/Eigen/src/Core/products/SelfadjointMatrixVector.h (deleted: r3140)
  • src/Eigen/src/Core/products/SelfadjointMatrixVector_MKL.h (deleted: r3140)
  • src/Eigen/src/Core/products/SelfadjointProduct.h (deleted: r3140)
  • src/Eigen/src/Core/products/SelfadjointRank2Update.h (deleted: r3140)
  • src/Eigen/src/Core/products/TriangularMatrixMatrix.h (deleted: r3140)
  • src/Eigen/src/Core/products/TriangularMatrixMatrix_MKL.h (deleted: r3140)
  • src/Eigen/src/Core/products/TriangularMatrixVector.h (deleted: r3140)
  • src/Eigen/src/Core/products/TriangularMatrixVector_MKL.h (deleted: r3140)
  • src/Eigen/src/Core/products/TriangularSolverMatrix.h (deleted: r3140)
  • src/Eigen/src/Core/products/TriangularSolverMatrix_MKL.h (deleted: r3140)
  • src/Eigen/src/Core/products/TriangularSolverVector.h (deleted: r3140)
  • src/Eigen/src/Core/util/BlasUtil.h (deleted: r3140)
  • src/Eigen/src/Core/util/CMakeLists.txt (deleted: r3140)
  • src/Eigen/src/Core/util/Constants.h (deleted: r3140)
  • src/Eigen/src/Core/util/DisableStupidWarnings.h (deleted: r3140)
  • src/Eigen/src/Core/util/ForwardDeclarations.h (deleted: r3140)
  • src/Eigen/src/Core/util/MKL_support.h (deleted: r3140)
  • src/Eigen/src/Core/util/Macros.h (deleted: r3140)
  • src/Eigen/src/Core/util/Memory.h (deleted: r3140)
  • src/Eigen/src/Core/util/Meta.h (deleted: r3140)
  • src/Eigen/src/Core/util/NonMPL2.h (deleted: r3140)
  • src/Eigen/src/Core/util/ReenableStupidWarnings.h (deleted: r3140)
  • src/Eigen/src/Core/util/StaticAssert.h (deleted: r3140)
  • src/Eigen/src/Core/util/XprHelper.h (deleted: r3140)
  • src/Eigen/src/Eigenvalues/CMakeLists.txt (deleted: r3140)
  • src/Eigen/src/Eigenvalues/ComplexEigenSolver.h (deleted: r3140)
  • src/Eigen/src/Eigenvalues/ComplexSchur.h (deleted: r3140)
  • src/Eigen/src/Eigenvalues/ComplexSchur_MKL.h (deleted: r3140)
  • src/Eigen/src/Eigenvalues/EigenSolver.h (deleted: r3140)
  • src/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h (deleted: r3140)
  • src/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h (deleted: r3140)
  • src/Eigen/src/Eigenvalues/HessenbergDecomposition.h (deleted: r3140)
  • src/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h (deleted: r3140)
  • src/Eigen/src/Eigenvalues/RealQZ.h (deleted: r3140)
  • src/Eigen/src/Eigenvalues/RealSchur.h (deleted: r3140)
  • src/Eigen/src/Eigenvalues/RealSchur_MKL.h (deleted: r3140)
  • src/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h (deleted: r3140)
  • src/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_MKL.h (deleted: r3140)
  • src/Eigen/src/Eigenvalues/Tridiagonalization.h (deleted: r3140)
  • src/Eigen/src/Geometry/AlignedBox.h (deleted: r3140)
  • src/Eigen/src/Geometry/AngleAxis.h (deleted: r3140)
  • src/Eigen/src/Geometry/CMakeLists.txt (deleted: r3140)
  • src/Eigen/src/Geometry/EulerAngles.h (deleted: r3140)
  • src/Eigen/src/Geometry/Homogeneous.h (deleted: r3140)
  • src/Eigen/src/Geometry/Hyperplane.h (deleted: r3140)
  • src/Eigen/src/Geometry/OrthoMethods.h (deleted: r3140)
  • src/Eigen/src/Geometry/ParametrizedLine.h (deleted: r3140)
  • src/Eigen/src/Geometry/Quaternion.h (deleted: r3140)
  • src/Eigen/src/Geometry/Rotation2D.h (deleted: r3140)
  • src/Eigen/src/Geometry/RotationBase.h (deleted: r3140)
  • src/Eigen/src/Geometry/Scaling.h (deleted: r3140)
  • src/Eigen/src/Geometry/Transform.h (deleted: r3140)
  • src/Eigen/src/Geometry/Translation.h (deleted: r3140)
  • src/Eigen/src/Geometry/Umeyama.h (deleted: r3140)
  • src/Eigen/src/Geometry/arch/CMakeLists.txt (deleted: r3140)
  • src/Eigen/src/Geometry/arch/Geometry_SSE.h (deleted: r3140)
  • src/Eigen/src/Householder/BlockHouseholder.h (deleted: r3140)
  • src/Eigen/src/Householder/CMakeLists.txt (deleted: r3140)
  • src/Eigen/src/Householder/Householder.h (deleted: r3140)
  • src/Eigen/src/Householder/HouseholderSequence.h (deleted: r3140)
  • src/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h (deleted: r3140)
  • src/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h (deleted: r3140)
  • src/Eigen/src/IterativeLinearSolvers/CMakeLists.txt (deleted: r3140)
  • src/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h (deleted: r3140)
  • src/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h (deleted: r3140)
  • src/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h (deleted: r3140)
  • src/Eigen/src/Jacobi/CMakeLists.txt (deleted: r3140)
  • src/Eigen/src/Jacobi/Jacobi.h (deleted: r3140)
  • src/Eigen/src/LU/CMakeLists.txt (deleted: r3140)
  • src/Eigen/src/LU/Determinant.h (deleted: r3140)
  • src/Eigen/src/LU/FullPivLU.h (deleted: r3140)
  • src/Eigen/src/LU/Inverse.h (deleted: r3140)
  • src/Eigen/src/LU/PartialPivLU.h (deleted: r3140)
  • src/Eigen/src/LU/PartialPivLU_MKL.h (deleted: r3140)
  • src/Eigen/src/LU/arch/CMakeLists.txt (deleted: r3140)
  • src/Eigen/src/LU/arch/Inverse_SSE.h (deleted: r3140)
  • src/Eigen/src/MetisSupport/CMakeLists.txt (deleted: r3140)
  • src/Eigen/src/MetisSupport/MetisSupport.h (deleted: r3140)
  • src/Eigen/src/OrderingMethods/Amd.h (deleted: r3140)
  • src/Eigen/src/OrderingMethods/CMakeLists.txt (deleted: r3140)
  • src/Eigen/src/OrderingMethods/Eigen_Colamd.h (deleted: r3140)
  • src/Eigen/src/OrderingMethods/Ordering.h (deleted: r3140)
  • src/Eigen/src/PaStiXSupport/CMakeLists.txt (deleted: r3140)
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  • src/Eigen/src/SVD/JacobiSVD.h (deleted: r3140)
  • src/Eigen/src/SVD/JacobiSVD_MKL.h (deleted: r3140)
  • src/Eigen/src/SVD/UpperBidiagonalization.h (deleted: r3140)
  • src/Eigen/src/SparseCholesky/CMakeLists.txt (deleted: r3140)
  • src/Eigen/src/SparseCholesky/SimplicialCholesky.h (deleted: r3140)
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  • src/Eigen/src/SparseCore/SparseCwiseBinaryOp.h (deleted: r3140)
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September 12, 2014

mhunter committed r3811 in OpenMx at 15:46:
Add ordinal ML/WLS test with both model identifications
jpritikin committed r3810 in OpenMx at 12:19:
For saturated type=cov model, set TLI=1 and RMSEA=0
in /trunk:

September 11, 2014

jpritikin committed r3809 in OpenMx at 15:00:
Add internal API omxNewInternalFitFunction
jpritikin committed r3808 in OpenMx at 11:38:
Add omxChangeFitType

September 10, 2014

jpritikin committed r3807 in OpenMx at 10:00:
Recompute thresholds (when provided)

September 9, 2014

mhunter committed r3806 in OpenMx at 18:25:
Modified debugging in WLS
in /trunk/src: omxWLSFitFunction.cpp (modified, previous: r3784)

September 8, 2014

jpritikin committed r3805 in OpenMx at 19:08:
Rewrite algebra/fitfunction lookup in MxFitFunctionMultigroup
in /trunk/R: MxFitFunctionMultigroup.R (modified, previous: r3724)
jpritikin committed r3804 in OpenMx at 19:08:
Restore commented part of test
in /trunk/models/passing: AlgebraDeriv.R (modified, previous: r3267)
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